PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.134770.1

Common Name

Csa_1G051740, LOC101205943

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 373aa MW: 41332.2 Da PI: 7.1007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.134770.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Cucsa.134770.1 190 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 237 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.13E-11	184	241	No hit	No description
SuperFamily	SSF47459	2.75E-17	184	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.993	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-17	186	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-7	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-11	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAAFSYQYQP FLLDSIFLHN NNPLKMGGFF DEQNFNTNCF SPFYPQDHQP QQQQQQQQQQ 60 QQEQPIYHFP DLSKQSPESS TLVDRSDSAE LPVGDQLKPA VTVTVTSPCS KKRKSRNNSS 120 ASSAQSKGSN DQSNGKKAKN KGEVEEGKER DQKAKSGKKL LEEKLKDSED GGATTGYIHV 180 RARRGQATDS HSLAERVRRE KISERMKTLQ RLVPGCDKVT GKALMLDEII NYVQSLQNQV 240 EFLSMKLASL NPIFFDFRMD LDGLMIQPET TSLSSITPTL PAMAQCSVVS QPALIDTTPP 300 ATPSPAISTG NNFPLMDPSA NLFLLQQGIS PSNGYSQSSQ DNVKVSSWDV EDQKRKQLLI 360 SSGIGDNLCY FH*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAAFSYQYQP FLLDSIFLHN NNPLKMGGFF DEQNFNTNCF SPFYPQDHQP QQQQQQQQQQ  60
QQEQPIYHFP DLSKQSPESS TLVDRSDSAE LPVGDQLKPA VTVTVTSPCS KKRKSRNNSS  120
ASSAQSKGSN DQSNGKKAKN KGEVEEGKER DQKAKSGKKL LEEKLKDSED GGATTGYIHV  180
RARRGQATDS HSLAERVRRE KISERMKTLQ RLVPGCDKVT GKALMLDEII NYVQSLQNQV  240
EFLSMKLASL NPIFFDFRMD LDGLMIQPET TSLSSITPTL PAMAQCSVVS QPALIDTTPP  300
ATPSPAISTG NNFPLMDPSA NLFLLQQGIS PSNGYSQSSQ DNVKVSSWDV EDQKRKQLLI  360
SSGIGDNLCY FH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-120	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-120	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004154003.1	0.0	PREDICTED: transcription factor bHLH137
TrEMBL	A0A0A0LUH5	0.0	A0A0A0LUH5_CUCSA; Uncharacterized protein
STRING	VIT_17s0000g00430.t01	1e-90	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	4e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.134770.1
Entrez Gene	101205943

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]