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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.134770.1 | ||||||||
Common Name | Csa_1G051740, LOC101205943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 373aa MW: 41332.2 Da PI: 7.1007 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 190 | 237 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Cucsa.134770.1 190 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 237 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.13E-11 | 184 | 241 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-17 | 184 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.993 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-17 | 186 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-7 | 190 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-11 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MAAFSYQYQP FLLDSIFLHN NNPLKMGGFF DEQNFNTNCF SPFYPQDHQP QQQQQQQQQQ 60 QQEQPIYHFP DLSKQSPESS TLVDRSDSAE LPVGDQLKPA VTVTVTSPCS KKRKSRNNSS 120 ASSAQSKGSN DQSNGKKAKN KGEVEEGKER DQKAKSGKKL LEEKLKDSED GGATTGYIHV 180 RARRGQATDS HSLAERVRRE KISERMKTLQ RLVPGCDKVT GKALMLDEII NYVQSLQNQV 240 EFLSMKLASL NPIFFDFRMD LDGLMIQPET TSLSSITPTL PAMAQCSVVS QPALIDTTPP 300 ATPSPAISTG NNFPLMDPSA NLFLLQQGIS PSNGYSQSSQ DNVKVSSWDV EDQKRKQLLI 360 SSGIGDNLCY FH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-120 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-120 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004154003.1 | 0.0 | PREDICTED: transcription factor bHLH137 | ||||
TrEMBL | A0A0A0LUH5 | 0.0 | A0A0A0LUH5_CUCSA; Uncharacterized protein | ||||
STRING | VIT_17s0000g00430.t01 | 1e-90 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4182 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 4e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.134770.1 |
Entrez Gene | 101205943 |
Publications ? help Back to Top | |||
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