PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.134770.1
Common NameCsa_1G051740, LOC101205943
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 373aa    MW: 41332.2 Da    PI: 7.1007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.134770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09190237455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Cucsa.134770.1 190 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 237
                     8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.13E-11184241No hitNo description
SuperFamilySSF474592.75E-17184252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.993186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17186251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-7190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAAFSYQYQP FLLDSIFLHN NNPLKMGGFF DEQNFNTNCF SPFYPQDHQP QQQQQQQQQQ  60
QQEQPIYHFP DLSKQSPESS TLVDRSDSAE LPVGDQLKPA VTVTVTSPCS KKRKSRNNSS  120
ASSAQSKGSN DQSNGKKAKN KGEVEEGKER DQKAKSGKKL LEEKLKDSED GGATTGYIHV  180
RARRGQATDS HSLAERVRRE KISERMKTLQ RLVPGCDKVT GKALMLDEII NYVQSLQNQV  240
EFLSMKLASL NPIFFDFRMD LDGLMIQPET TSLSSITPTL PAMAQCSVVS QPALIDTTPP  300
ATPSPAISTG NNFPLMDPSA NLFLLQQGIS PSNGYSQSSQ DNVKVSSWDV EDQKRKQLLI  360
SSGIGDNLCY FH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-120LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-120LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004154003.10.0PREDICTED: transcription factor bHLH137
TrEMBLA0A0A0LUH50.0A0A0A0LUH5_CUCSA; Uncharacterized protein
STRINGVIT_17s0000g00430.t011e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-53bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]